This list of sequence alignment software is a compilation of software tools and web portals. Any free ngs data analysis software that runs on windows. Sequencecontext specific blast, more sensitive than blast, fasta. Next generation sequencing plant molecular biology. A number of free software programs are available for viewing trace or chromatogram files. G6g directory of omics and intelligent software software product abstracts by application, crossomics, next generation sequence analysistools. Supports dna seq, rnaseq, chipseq, methylseq, medipseq, small rnaseq, pathway.
In addition to genome browser ucsc visualization support and peak finding and motif finding of course, homer can help assemble data across multiple experiments and look at positional specific relationships between sequencing tags, motifs, and other features. Homer offers tools and methods for interpreting nextgen seq experiments. Strand ngs formerly avadis ngs is an integrated platform that provides analysis, management and visualization tools for nextgeneration sequencing data. The illumina dragen dynamic read analysis for genomics bioit platform provides fast, robust secondary analysis of nextgeneration sequencing ngs data. Home products sequencher sequencher features next generation sequencing. Lasergene genomics ngs and snp analysis software dnastar. Software packages for next gen sequence analysis seqanswers. Next generation sequence analysistools g6g directory of. Tools for viewing sequencing data resources genewiz.
Strand ngs is next generation sequencing data analysis tool. List of bioinformatics software tools for next generation sequencing. We work with tcr sequences and thus analysis is based on how to analyze tcr. It is intended for transcriptomic and genomic sequencing reads. The gatk is a structured software library that makes writing efficient analysis tools using nextgeneration sequencing data very easy, and second its a suite of. Lasergene genomics provides everything you need for nextgen sequencing including assembly, alignment, and analysis. Comprehensive ngs software pipeline for assembly, alignment, variant calling and analysis of ngs data. Tools for viewing sanger sequencing data sequence chromatogram viewing software. Seqman genome analyser software for next generation sequence assembly of illumina, roche flx and sanger. Crac is a tool to analyze high throughput sequencing hts, also called next generation sequencing ngs, data in comparison to a reference genome. You can load your own data or get data from an external source. List of bioinformatics software tools for next generation. Strand ngs offers many different tools including alignment, rnaseq, dnaseq, chipseq, small rnaseq, genome browser, visualizations, biological interpretation, etc.